{"id":544,"date":"2016-09-13T07:14:40","date_gmt":"2016-09-13T07:14:40","guid":{"rendered":"http:\/\/www.abyteofcommonsense.com\/?p=544"},"modified":"2016-09-14T07:31:13","modified_gmt":"2016-09-14T07:31:13","slug":"my-murray-river-turtle-has-shell-rot","status":"publish","type":"post","link":"http:\/\/www.abyteofcommonsense.com\/?p=544","title":{"rendered":"My Murray River Turtle Has Shell Rot"},"content":{"rendered":"<figure id=\"attachment_554\" aria-describedby=\"caption-attachment-554\" style=\"width: 595px\" class=\"wp-caption alignnone\"><a href=\"https:\/\/i1.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-04-17.09.06.jpg\"><img loading=\"lazy\" class=\"size-medium wp-image-554\" src=\"https:\/\/i1.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-04-17.09.06.jpg?resize=595%2C446\" alt=\"This is the biggest visible spot of shell rot on Alfie's shell. I was absolutely horrified to see it - apparently it had been there for a couple of weeks before anyone told me about it.\" width=\"595\" height=\"446\" srcset=\"https:\/\/i1.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-04-17.09.06.jpg?resize=595%2C446 595w, https:\/\/i1.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-04-17.09.06.jpg?resize=768%2C576 768w, https:\/\/i1.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-04-17.09.06.jpg?resize=960%2C720 960w, https:\/\/i1.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-04-17.09.06.jpg?w=2000 2000w, https:\/\/i1.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-04-17.09.06.jpg?w=3000 3000w\" sizes=\"(max-width: 595px) 100vw, 595px\" data-recalc-dims=\"1\" \/><\/a><figcaption id=\"caption-attachment-554\" class=\"wp-caption-text\">This is the biggest visible spot of shell rot on Alfie&#8217;s shell. I was absolutely horrified to see it &#8211; apparently it had been there for a couple of weeks before anyone told me about it.<\/figcaption><\/figure>\n<p>&nbsp;<\/p>\n<figure id=\"attachment_545\" aria-describedby=\"caption-attachment-545\" style=\"width: 595px\" class=\"wp-caption alignnone\"><a href=\"https:\/\/i1.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-04-17.20.26.jpg\"><img loading=\"lazy\" class=\"size-medium wp-image-545\" src=\"https:\/\/i1.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-04-17.20.26.jpg?resize=595%2C446\" alt=\"Here you can see Alfie's shell just after I have cleaned it with Betadine on a Q-tip. I've managed to remove the big lump of fungus that was there, but it has already gone into his shell.\" width=\"595\" height=\"446\" srcset=\"https:\/\/i1.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-04-17.20.26.jpg?resize=595%2C446 595w, https:\/\/i1.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-04-17.20.26.jpg?resize=768%2C576 768w, https:\/\/i1.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-04-17.20.26.jpg?resize=960%2C720 960w, https:\/\/i1.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-04-17.20.26.jpg?w=2000 2000w, https:\/\/i1.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-04-17.20.26.jpg?w=3000 3000w\" sizes=\"(max-width: 595px) 100vw, 595px\" data-recalc-dims=\"1\" \/><\/a><figcaption id=\"caption-attachment-545\" class=\"wp-caption-text\">Here you can see Alfie&#8217;s shell just after I have cleaned it with Betadine on a Q-tip. I&#8217;ve managed to remove the big lump of fungus that was there, but it has already gone into his shell.<\/figcaption><\/figure>\n<p>&nbsp;<\/p>\n<figure id=\"attachment_548\" aria-describedby=\"caption-attachment-548\" style=\"width: 220px\" class=\"wp-caption alignleft\"><a href=\"https:\/\/i0.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-13-08.31.43.jpg\"><img loading=\"lazy\" class=\"wp-image-548 \" src=\"https:\/\/i2.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-13-08.31.43-e1473836109506-480x640.jpg?resize=220%2C294\" alt=\"This is Alfie's 'dry dock'. To try and keep it warm for him despite being in the dark the blue cushion underneath is a wheat-filled heat pack.\" width=\"220\" height=\"294\" srcset=\"https:\/\/i0.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-13-08.31.43-e1473836109506.jpg?resize=480%2C640 480w, https:\/\/i0.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-13-08.31.43-e1473836109506.jpg?resize=595%2C793 595w, https:\/\/i0.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-13-08.31.43-e1473836109506.jpg?resize=768%2C1024 768w, https:\/\/i0.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-13-08.31.43-e1473836109506.jpg?resize=960%2C1280 960w, https:\/\/i0.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-13-08.31.43-e1473836109506.jpg?w=2000 2000w\" sizes=\"(max-width: 220px) 100vw, 220px\" data-recalc-dims=\"1\" \/><\/a><figcaption id=\"caption-attachment-548\" class=\"wp-caption-text\">This is Alfie&#8217;s &#8216;dry dock&#8217;. To try and keep it warm for him despite being in the dark, the blue cushion underneath is a wheat-filled heat pack.<\/figcaption><\/figure>\n<figure id=\"attachment_547\" aria-describedby=\"caption-attachment-547\" style=\"width: 331px\" class=\"wp-caption alignright\"><a href=\"https:\/\/i1.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-12-14.53.41.jpg\"><img loading=\"lazy\" class=\"wp-image-547 \" src=\"https:\/\/i2.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-12-14.53.41-e1473836406854-595x793.jpg?resize=331%2C441\" alt=\"I set up a small isolation tank for Alfie, but didn't actually have a proper light. It's also a bit small for him - I just kept it small so I could change the water every day and add 'Turtle Fix'.\" width=\"331\" height=\"441\" srcset=\"https:\/\/i2.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-12-14.53.41-e1473836406854.jpg?resize=595%2C793 595w, https:\/\/i2.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-12-14.53.41-e1473836406854.jpg?resize=480%2C640 480w, https:\/\/i2.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-12-14.53.41-e1473836406854.jpg?resize=768%2C1024 768w, https:\/\/i2.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-12-14.53.41-e1473836406854.jpg?resize=960%2C1280 960w, https:\/\/i2.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-12-14.53.41-e1473836406854.jpg?w=2000 2000w\" sizes=\"(max-width: 331px) 100vw, 331px\" data-recalc-dims=\"1\" \/><\/a><figcaption id=\"caption-attachment-547\" class=\"wp-caption-text\">I set up a small isolation tank for Alfie, but didn&#8217;t actually have a proper light. It&#8217;s also a bit small for him &#8211; I just kept it small so I could change the water every day and add &#8216;Turtle Fix&#8217;. You can see him here sitting on top of the water heater that I borrowed from my fish tank. The temperature in there is about 24*C.<\/figcaption><\/figure>\n<p>&nbsp;<\/p>\n<figure id=\"attachment_549\" aria-describedby=\"caption-attachment-549\" style=\"width: 251px\" class=\"wp-caption alignleft\"><a href=\"https:\/\/i0.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-13-10.27.06.jpg\"><img loading=\"lazy\" class=\"wp-image-549 \" src=\"https:\/\/i0.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-13-10.27.06.jpg?resize=251%2C188\" alt=\"I splurged and bought Alfie this fancy 'Terrarium Canopy', which holds red and blue and UV lamps. I'm hoping this will help his shell firm up.\" width=\"251\" height=\"188\" srcset=\"https:\/\/i0.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-13-10.27.06.jpg?resize=595%2C446 595w, https:\/\/i0.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-13-10.27.06.jpg?resize=768%2C576 768w, https:\/\/i0.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-13-10.27.06.jpg?resize=960%2C720 960w, https:\/\/i0.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-13-10.27.06.jpg?w=2000 2000w, https:\/\/i0.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-13-10.27.06.jpg?w=3000 3000w\" sizes=\"(max-width: 251px) 100vw, 251px\" data-recalc-dims=\"1\" \/><\/a><figcaption id=\"caption-attachment-549\" class=\"wp-caption-text\">I splurged and bought Alfie this fancy &#8216;Terrarium Canopy&#8217;, which holds red and blue and UV lamps. I&#8217;m hoping this will help his shell firm up.<\/figcaption><\/figure>\n<p>&nbsp;<\/p>\n<figure id=\"attachment_551\" aria-describedby=\"caption-attachment-551\" style=\"width: 350px\" class=\"wp-caption alignright\"><a href=\"https:\/\/i2.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-13-11.41.53.jpg\"><img loading=\"lazy\" class=\"wp-image-551 \" src=\"https:\/\/i1.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-13-11.41.53-e1473836612108-595x793.jpg?resize=350%2C466\" alt=\"Here's Alfie's tank set up with the new lamp cover (it's actually too big, so I let the blue light part hang over the side). The toothbrush you can see there is what I have been using to wash Alfie off before I return him to the water. He sits in dry dock for a couple of hours with 4% Chorhexidine solution, then I give him a bath in the sink.\" width=\"350\" height=\"466\" srcset=\"https:\/\/i2.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-13-11.41.53-e1473836612108.jpg?resize=595%2C793 595w, https:\/\/i2.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-13-11.41.53-e1473836612108.jpg?resize=480%2C640 480w, https:\/\/i2.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-13-11.41.53-e1473836612108.jpg?resize=768%2C1024 768w, https:\/\/i2.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-13-11.41.53-e1473836612108.jpg?resize=960%2C1280 960w, https:\/\/i2.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-13-11.41.53-e1473836612108.jpg?w=2000 2000w\" sizes=\"(max-width: 350px) 100vw, 350px\" data-recalc-dims=\"1\" \/><\/a><figcaption id=\"caption-attachment-551\" class=\"wp-caption-text\">Here&#8217;s Alfie&#8217;s tank set up with the new lamp cover (it&#8217;s actually too big, so I let the blue light part hang over the side). The toothbrush you can see there is what I have been using to wash Alfie off before I return him to the water. He sits in dry dock for a couple of hours with 4% Chorhexidine solution, then I give him a bath in the sink.<\/figcaption><\/figure>\n<p>&nbsp;<\/p>\n<figure id=\"attachment_555\" aria-describedby=\"caption-attachment-555\" style=\"width: 595px\" class=\"wp-caption alignnone\"><a href=\"https:\/\/i2.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-14-17.06.30.jpg\"><img loading=\"lazy\" class=\"size-medium wp-image-555\" src=\"https:\/\/i2.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-14-17.06.30.jpg?resize=595%2C446\" alt=\"Here's Alfie's shell 3 days into my intensive treatment of him. You can see that lots of scutes have shed (you have no idea how excited I was about that), and he is a paler colour. Unfortunately the fungus spot is still there, but I think it is growing smaller.\" width=\"595\" height=\"446\" srcset=\"https:\/\/i2.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-14-17.06.30.jpg?resize=595%2C446 595w, https:\/\/i2.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-14-17.06.30.jpg?resize=768%2C576 768w, https:\/\/i2.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-14-17.06.30.jpg?resize=960%2C720 960w, https:\/\/i2.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-14-17.06.30.jpg?w=2000 2000w, https:\/\/i2.wp.com\/www.abyteofcommonsense.com\/wp-content\/uploads\/2016\/09\/2016-09-14-17.06.30.jpg?w=3000 3000w\" sizes=\"(max-width: 595px) 100vw, 595px\" data-recalc-dims=\"1\" \/><\/a><figcaption id=\"caption-attachment-555\" class=\"wp-caption-text\">Here&#8217;s Alfie&#8217;s shell 3 days into my intensive treatment of him. You can see that lots of scutes have shed (you have no idea how excited I was about that), and he is a paler colour. Unfortunately the fungus spot is still there, but I think it is growing smaller. He managed to chase down a neon tetra feeder fish and eat it this morning, so I have hope he will get better.<\/figcaption><\/figure>\n","protected":false},"excerpt":{"rendered":"<p>&nbsp; &nbsp; &nbsp; &nbsp; &nbsp;<\/p>\n","protected":false},"author":2,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"spay_email":"","jetpack_publicize_message":"","jetpack_is_tweetstorm":false},"categories":[77],"tags":[],"jetpack_featured_media_url":"","jetpack_publicize_connections":[],"jetpack_sharing_enabled":true,"jetpack_shortlink":"https:\/\/wp.me\/p6nzXS-8M","jetpack-related-posts":[{"id":412,"url":"http:\/\/www.abyteofcommonsense.com\/?p=412","url_meta":{"origin":544,"position":0},"title":"Using the mac OSX command line","date":"November 30, 2015","format":false,"excerpt":"The most sensible way to set up your working environment in the Mac command line when you want to do the same thing in multiple folders is to make sure you have labelled everything in the same way.\u00a0A handy hint here is that if you have terminal open, and you\u2026","rel":"","context":"In &quot;Bioinformatics&quot;","img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":457,"url":"http:\/\/www.abyteofcommonsense.com\/?p=457","url_meta":{"origin":544,"position":1},"title":"Converting Gene Names to GO IDs or GO terms","date":"January 14, 2016","format":false,"excerpt":"This is to prevent frustration when doing a beginner's task of annotating genes with GO IDs, or Gene Ontologies. This is useful to visualise large datasets of genes. First, convert\u00a0your gene names to a format recognised by UniProtKB. The tool you can use is DAVID. Don't try and use the\u2026","rel":"","context":"In &quot;Bioinformatics&quot;","img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]}],"_links":{"self":[{"href":"http:\/\/www.abyteofcommonsense.com\/index.php?rest_route=\/wp\/v2\/posts\/544"}],"collection":[{"href":"http:\/\/www.abyteofcommonsense.com\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.abyteofcommonsense.com\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.abyteofcommonsense.com\/index.php?rest_route=\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"http:\/\/www.abyteofcommonsense.com\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=544"}],"version-history":[{"count":1,"href":"http:\/\/www.abyteofcommonsense.com\/index.php?rest_route=\/wp\/v2\/posts\/544\/revisions"}],"predecessor-version":[{"id":556,"href":"http:\/\/www.abyteofcommonsense.com\/index.php?rest_route=\/wp\/v2\/posts\/544\/revisions\/556"}],"wp:attachment":[{"href":"http:\/\/www.abyteofcommonsense.com\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=544"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.abyteofcommonsense.com\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=544"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.abyteofcommonsense.com\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=544"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}